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1

Discovering Protein Drug Targets Using Knowledge Graph Embeddings

Mohamed, Sameh K, Nováček, Vít, Nounu, Aayah, Cowen, Lenore

Journal:

Year:

2019

Language:

english

File:

PDF, 346 KB

english, 2019

2

atomiumâa Python structure parser

Ireland, Sam M, Martin, Andrew C R, Cowen, Lenore

Journal:

Year:

2020

File:

PDF, 684 KB

2020

3

Fast Distributed Network Decompositions and Covers

Baruch Awerbuch, Bonnie Berger, Lenore Cowen, David Peleg

Journal:

Journal of Parallel and Distributed Computing

Year:

1996

Language:

english

File:

PDF, 315 KB

english, 1996

4

Hypercube sandwich approach to conferencing

Joanne F. Houlahan, Lenore J. Cowen, Gerald M. Masson

Journal:

The Journal of Supercomputing

Year:

1996

Language:

english

File:

PDF, 734 KB

english, 1996

5

Near-Linear Time Construction of Sparse Neighborhood Covers

Awerbuch, Baruch, Berger, Bonnie, Cowen, Lenore, Peleg, David

Journal:

SIAM Journal on Computing

Year:

1998

Language:

english

File:

PDF, 306 KB

english, 1998

6

[ACM Press the twenty-sixth annual ACM symposium - Montreal, Quebec, Canada (1994.05.23-1994.05.25)] Proceedings of the twenty-sixth annual ACM symposium on Theory of computing - STOC '94 - Efficient asynchronous distributed symmetry breaking

Awerbuch, Baruch, Cowen, Lenore J., Smith, Mark A.

Year:

1994

Language:

english

File:

PDF, 937 KB

english, 1994

7

[ACM Press the eleventh annual ACM symposium - Vancouver, British Columbia, Canada (1992.08.10-1992.08.12)] Proceedings of the eleventh annual ACM symposium on Principles of distributed computing - PODC '92 - Fast network decomposition

Awerbuch, Baruch, Berger, Bonnie, Cowen, Lenore, Peleg, David

Year:

1992

Language:

english

File:

PDF, 730 KB

english, 1992

8

Network propagation: a universal amplifier of genetic associations

Cowen, Lenore, Ideker, Trey, Raphael, Benjamin J., Sharan, Roded

Journal:

Nature Reviews Genetics

Year:

2017

Language:

english

File:

PDF, 593 KB

english, 2017

9

AutoDock Bias: improving binding mode prediction and virtual screening using known protein-ligand interactions

Arcon, Juan Pablo, Modenutti, Carlos P, Avendano, Demian, Lopez, Elias D, Defelipe, Lucas A, Alessandra Ambrosio, Francesca, Turjanski, Adrian G, Forli, Stefano, Marti, Marcelo A, Cowen, Lenore

Journal:

Year:

2019

Language:

english

File:

PDF, 213 KB

english, 2019

10

[Lecture Notes in Computer Science] Research in Computational Molecular Biology Volume 11467 (23rd Annual International Conference, RECOMB 2019, Washington, DC, USA, May 5-8, 2019, Proceedings) || How Many Subpopulations Is Too Many? Exponential Lower Bounds for Inferring Population Histories

Cowen, Lenore J.

Year:

2019

File:

PDF, 636 KB

2019

11

sAOP: Linking chemical stressors to Adverse Outcomes Pathway Networks

Aguayo-Orozco, Alejandro, Audouze, Karine, Siggaard, Troels, Barouki, Robert, Brunak, Søren, Taboureau, Olivier, Cowen, Lenore

Journal:

Year:

2019

Language:

english

File:

PDF, 380 KB

english, 2019

12

Taxonomic Weighting Improves the Accuracy of a Gap-Filling Algorithm for Metabolic Models

Ong, Wai Kit, Midford, Peter E, Karp, Peter D, Cowen, Lenore

Journal:

Year:

2019

File:

PDF, 683 KB

2019

13

GREMA: Modelling of emulated gene regulatory networks with confidence levels based on evolutionary intelligence to cope with the underdetermined problem

Tsai, Ming-Ju, Wang, Jyun-Rong, Ho, Shinn-Jang, Shu, Li-Sun, Huang, Wen-Lin, Ho, Shinn-Ying, Cowen, Lenore

Journal:

Year:

2020

File:

PDF, 643 KB

2020

14

Generalized Born radii computation using linear models and neural networks

Mahmoud, Saida Saad Mohamed, Esposito, Gennaro, Serra, Giuseppe, Fogolari, Federico, Cowen, Lenore

Journal:

Year:

2020

File:

PDF, 4.33 MB

2020

15

[WORLD SCIENTIFIC Pacific Symposium on Biocomputing 2021 - Kohala Coast, Hawaii, USA (3 â 7 January 2021)] Biocomputing 2021 - Bioinformatics of corals: Investigating heterogeneous omics data from coral holobionts for insight into reef health and resillience

Cowen, Lenore J., Klein-Seetharaman, Judith, Putnam, Hollie

File:

PDF, 183 KB

16

Defective coloring revisited

Cowen, Lenore, Goddard, Wayne, Jesurum, C. Esther

Journal:

Journal of Graph Theory

Year:

1997

Language:

english

File:

PDF, 164 KB

english, 1997

17

Randomized Nonlinear Projections Uncover High-Dimensional Structure

Lenore J. Cowen, Carey E. Priebe

Journal:

Advances in Applied Mathematics

Year:

1997

Language:

english

File:

PDF, 260 KB

english, 1997

18

Compact Routing with Minimum Stretch

Journal:

Journal of Algorithms

Year:

2001

Language:

english

File:

PDF, 111 KB

english, 2001

19

GUEST EDITOR'S FOREWORD

Lenore Cowen, Ronald Fagin, Joe Kilian, Jon Kleinberg

Journal:

Journal of Computer and System Sciences

Year:

2002

File:

PDF, 27 KB

2002

20

Concurrence probabilities for a locally slotted packet radio network by combinatorial methods

Rudolf Mathar, Lenore Cowen

Journal:

Performance Evaluation

Year:

1993

Language:

english

File:

PDF, 482 KB

english, 1993

21

The distinguishing number of the hypercube

Bill Bogstad, Lenore J. Cowen

Journal:

Discrete Mathematics

Year:

2004

Language:

english

File:

PDF, 207 KB

english, 2004

22

Compact roundtrip routing in directed networks

Lenore J. Cowen, Christopher G. Wagner

Journal:

Journal of Algorithms

Year:

2004

Language:

english

File:

PDF, 245 KB

english, 2004

23

Compact roundtrip routing with topology-independent node names

Marta Arias, Lenore J. Cowen, Kofi A. Laing

Journal:

Journal of Computer and System Sciences

Year:

2008

Language:

english

File:

PDF, 269 KB

english, 2008

24

Foreword

Lenore J. Cowen, Jerrold R. Griggs, Douglas B. West

Journal:

Discrete Mathematics

Year:

2002

Language:

english

File:

PDF, 31 KB

english, 2002

25

Fold recognition and accurate sequence–structure alignment of sequences directing β-sheet proteins

Andrew V. McDonnell, Matthew Menke, Nathan Palmer, Jonathan King, Lenore Cowen, Bonnie Berger

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2006

Language:

english

File:

PDF, 222 KB

english, 2006

26

STITCHER: Dynamic assembly of likely amyloid and prion β-structures from secondary structure predictions

Allen W. Bryan Jr., Charles W. O'Donnell, Matthew Menke, Lenore J. Cowen, Susan Lindquist, Bonnie Berger

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2012

Language:

english

File:

PDF, 519 KB

english, 2012

27

Low-diameter graph decomposition is in NC

Baruch Awerbuch, Bonnie Berger, Lenore Cowen, David Peleg

Journal:

Random Structures & Algorithms

Year:

1994

Language:

english

File:

PDF, 619 KB

english, 1994

28

A formal framework for evaluating heuristic programs

Lenore Cowen, Joan Feigenbaum, Sampath Kannan

Journal:

Annals of Mathematics and Artificial Intelligence

Year:

1998

Language:

english

File:

PDF, 167 KB

english, 1998

29

Compact Routing with Name Independence

Arias, Marta, Cowen, Lenore J., Laing, Kofi A., Rajaraman, Rajmohan, Taka, Orjeta

Journal:

SIAM Journal on Discrete Mathematics

Year:

2006

Language:

english

File:

PDF, 303 KB

english, 2006

30

Genecentric: a package to uncover graph-theoretic structure in high-throughput epistasis data

Andrew Gallant, Mark DM Leiserson, Maxim Kachalov, Lenore J Cowen…

Journal:

BMC Bioinformatics

Year:

2013

Language:

english

File:

PDF, 190 KB

english, 2013

31

Formatt: Correcting protein multiple structural alignments by incorporating sequence alignment

Noah M Daniels, Shilpa Nadimpalli, Lenore J Cowen

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 273 KB

english, 2012

32

Array-to-Array Transfer of an Artificial Nose Classifier

Stitzel, Shannon E., Cowen, Lenore J., Albert, Keith J., Walt, David R.

Journal:

Analytical Chemistry

Year:

2001

Language:

english

File:

PDF, 79 KB

english, 2001

33

A generalized wilcoxon-mann-whitney statistic

Priebe, Carey E., Cowen, Lenore J.

Journal:

Communication in Statistics- Theory and Methods

Year:

1999

Language:

english

File:

PDF, 239 KB

english, 1999

34

Touring Protein Space with Matt

Daniels, Noah, Kumar, Anoop, Cowen, Lenore, Menke, Matt

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Year:

2012

Language:

english

File:

PDF, 606 KB

english, 2012

35

Inferring Mechanisms of Compensation from E-MAP and SGA Data Using Local Search Algorithms for Max Cut

Leiserson, Mark D.M., Tatar, Diana, Cowen, Lenore J., Hescott, Benjamin J.

Journal:

Journal of Computational Biology

Year:

2011

Language:

english

File:

PDF, 265 KB

english, 2011

36

MRFy: Remote Homology Detection for Beta-Structural Proteins Using Markov Random Fields and Stochastic Search

Daniels, Noah M., Gallant, Andrew, Ramsey, Norman, Cowen, Lenore J.

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Year:

2015

Language:

english

File:

PDF, 1.69 MB

english, 2015

37

Predicting the Beta-Helix Fold from Protein Sequence Data

Cowen, Lenore, Bradley, Phil, Menke, Matthew, King, Jonathan, Berger, Bonnie

Journal:

Journal of Computational Biology

Year:

2002

Language:

english

File:

PDF, 282 KB

english, 2002

38

Wrap-and-Pack: A New Paradigm for Beta Structural Motif Recognition with Application to Recognizing Beta Trefoils

Menke, Matthew, King, Jonathan, Berger, Bonnie, Cowen, Lenore

Journal:

Journal of Computational Biology

Year:

2005

Language:

english

File:

PDF, 122 KB

english, 2005

39

Protein Coding Gene Nucleotide Substitution Pattern in the Apicomplexan Protozoa Cryptosporidium parvum and Cryptosporidium hominis

Ge, Guangtao, Cowen, Lenore, Feng, Xiaochuan, Widmer, Giovanni

Journal:

Comparative and Functional Genomics

Year:

2008

Language:

english

File:

PDF, 208 KB

english, 2008

40

Matt: Local Flexibility Aids Protein Multiple Structure Alignment

Menke, Matthew, Berger, Bonnie, Cowen, Lenore

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 650 KB

english, 2008

41

BETASCAN: Probable β-amyloids Identified by Pairwise Probabilistic Analysis

Bryan, Allen W., Menke, Matthew, Cowen, Lenore J., Lindquist, Susan L., Berger, Bonnie, Dunbrack, Roland

Journal:

PLoS Computational Biology

Year:

2009

Language:

english

File:

PDF, 981 KB

english, 2009

42

[ACM Press the ACM Conference - Orlando, Florida (2012.10.07-2012.10.10)] Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine - BCB '12 - Remote homology detection on alpha-structural proteins using simulated evolution

Cao, Mengfei, Cowen, Lenore J.

Year:

2012

Language:

english

File:

PDF, 509 KB

english, 2012

43

[ACM Press the eighth annual international conference - San Diego, California, USA (2004.03.27-2004.03.31)] Proceedings of the eighth annual international conference on Computational molecular biology - RECOMB '04 - Wrap-and-pack

Menke, Matthew, Scanlon, Eben, King, Jonathan, Berger, Bonnie, Cowen, Lenore

Year:

2004

Language:

english

File:

PDF, 371 KB

english, 2004

44

[ACM Press the eighteenth annual ACM symposium - Cambridge, Massachusetts, USA (2006.07.30-2006.08.02)] Proceedings of the eighteenth annual ACM symposium on Parallelism in algorithms and architectures - SPAA '06 - Compact routing with additive stretch using distance labelings

Brady, Arthur, Cowen, Lenore

Year:

2006

Language:

english

File:

PDF, 59 KB

english, 2006

45

[ACM Press the ACM Conference - Orlando, Florida (2012.10.07-2012.10.10)] Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine - BCB '12 - Genecentric

Gallant, Andrew, Leiserson, Mark D. M., Kachalov, Maxim, Cowen, Lenore J., Hescott, Benjamin J.

Year:

2012

Language:

english

File:

PDF, 122 KB

english, 2012

46

[ACM Press the fifteenth annual ACM symposium - San Diego, California, USA (2003.06.07-2003.06.09)] Proceedings of the fifteenth annual ACM symposium on Parallel algorithms and architectures - SPAA '03 - Compact routing with name independence

Arias, Marta, Cowen, Lenore J., Laing, Kofi A., Rajaraman, Rajmohan, Taka, Orjeta

Year:

2003

Language:

english

File:

PDF, 242 KB

english, 2003

47

[ACM Press the twenty-second annual symposium - Boston, Massachusetts (2003.07.13-2003.07.16)] Proceedings of the twenty-second annual symposium on Principles of distributed computing - PODC '03 - Compact roundtrip routing with topology-independent node names

Arias, Marta, Cowen, Lenore J., Laing, Kofi A.

Year:

2003

Language:

english

File:

PDF, 1.02 MB

english, 2003

48

[ACM Press the fifth annual international conference - Montreal, Quebec, Canada (2001.04.22-2001.04.25)] Proceedings of the fifth annual international conference on Computational biology - RECOMB '01 - Predicting the β-helix fold from protein sequence data

Bradley, Phil, Cowen, Lenore, Menke, Matthew, King, Jonathan, Berger, Bonnie

Year:

2001

File:

PDF, 254 KB

2001

49

[ACM Press the fifteenth annual ACM symposium - Philadelphia, Pennsylvania, United States (1996.05.23-1996.05.26)] Proceedings of the fifteenth annual ACM symposium on Principles of distributed computing - PODC '96 - The offset problem

Cowen, Lenore J., Mathar, Rudolph

Year:

1996

Language:

english

File:

PDF, 101 KB

english, 1996

50

[ACM Press the International Conference - Wshington DC, USA (2013.09.22-2013.09.25)] Proceedings of the International Conference on Bioinformatics, Computational Biology and Biomedical Informatics - BCB'13 - MRFy

Daniels, Noah M., Gallant, Andrew, Ramsey, Norman, Cowen, Lenore J.

Year:

2007

Language:

english

File:

PDF, 579 KB

english, 2007

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